Varghese’s eldest son, Roy was born on 15th March 1953. A B.A. graduate, he was an employee of Tyford Estate. Now he is working at Vandiperiyar Thankamala Estate. Pathamuttom Palayil Susamma is his wife. They have two daughters, Althiya and Alishya. Althiya, who has passed M.Sc., is a dietician at Lakeshore hospital, Ernakulam. Alishya, after obtaining B.Sc. Nursing, is working in a hospital in Hyderabad.