Varghese Thomas is the youngest son of Pothan Varghese. He married Puthuppally Thonippurackal Vakkayil Annamma. They live in the Kuzhiyadithara ancestral house. He was a father who took special care in giving a good education to his children. Therefore, all his sons are either school teachers or Govt. employees. They had sons, Varghese, Zachariah, Kurian, John, Iype, Pothan and daughters, Kunjamma and Kunjunjamma.